Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs11265410 | chr1:160430580 | C/T | 1.32E-5 | 490 | 16.35 | 16.97 | 15.33 | KM Plot |
| THCA | rs112673949 | chr10:73792775 | C/T | 4.7E-8 | 470 | 16.33 | 14.92 | 14 | KM Plot |
| THCA | rs112679565 | chr14:24661174 | C/T | 1.36E-5 | 479 | 15.65 | 16.57 | 16.52 | KM Plot |
| THCA | rs112717829 | chr7:64264941 | A/AT | 1.77E-10 | 486 | 16.57 | 14.65 | 14.47 | KM Plot |
| THCA | rs1127207 | chr2:241518105 | G/C | 1.77E-11 | 485 | 15.9 | 15 | 19.27 | KM Plot |
| THCA | rs112743107 | chr12:58061516 | C/T | 8.48E-6 | 487 | 15.08 | 19.52 | 18.43 | KM Plot |
| THCA | rs112751982 | chr6:26191958 | C/T | 2.21E-8 | 490 | 15.63 | 16.8 | 4.75 | KM Plot |
| THCA | rs11276773 | chr4:3174496 | TGATTCACA/T | 8.54E-5 | 488 | 16.87 | 14.18 | 14.3 | KM Plot |
| THCA | rs112804232 | chr6:24428029 | A/G | 1.1E-14 | 483 | 16.23 | 14.8 | 11.07 | KM Plot |
| THCA | rs112809537 | chr10:104670346 | C/T | 6.18E-9 | 488 | 15.17 | 17.68 | 32.1 | KM Plot |
| THCA | rs11281002 | chr4:3159802 | T/TCAACCTC | 0.000168 | 486 | 17.13 | 14.67 | 14.93 | KM Plot |
| THCA | rs112839082 | chr14:59683921 | G/A | 0 | 488 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs112843762 | chr8:12872824 | A/T | 0 | 490 | 16.07 | 14.47 | 13.33 | KM Plot |
| THCA | rs112851448 | chr14:59466077 | T/G | 2.01E-10 | 487 | 15.68 | 16.88 | 5.8 | KM Plot |
| THCA | rs11285878 | chr9:112199445 | AG/A | 8.3E-5 | 479 | 19.23 | 16.43 | 15.67 | KM Plot |